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Publications

  1. Coarfa, C. and Milosavljevic,A (2008). Pash 2.0: Scaleable Sequence Anchoring for Next-Generation Sequencing Technologies.. Pacific Symposium on Biocomputing , 13:102-113.
    (PDF)     (PS)

  2. Harris RA, Rogers J, Milosavljevic A (2007) Human-specific changes of genome structure detected by genomic triangulation. Science, Apr 13;316(5822):235-7.
    (PubMed) (Journal)

  3. Rhesus Macaque Genome Sequencing and Analysis Consortium (2007) Evolutionary and biomedical insights from the rhesus macaque genome. Science, Apr 13;316(5822):222-34.
    (PubMed) (Journal)

  4. Milosavljevic A, Harris RA, Sodergren EJ, Jackson AR, Kalafus KJ, Hodgson A, Cree A, Dai W, Csuros M, Zhu B, de Jong PJ, Weinstock GM, Gibbs RA (2005) Pooled Genomic Indexing of Rhesus Macaque. Genome Research , 15:292-301.
    (PubMed) (Journal)

  5. Csuros M, Milosavljevic A (2004). Pooled Genomic Indexing (PGI): Analysis and Design of Experiments. J Comput Biol, 11(2): 1001-1021.
    (PubMed) (Journal)

  6. Kalafus KJ, Jackson AR, and Milosavljevic A (2004). Pash: Efficient Genome-Scale Sequence Anchoring by Positional Hashing. Genome Res. 14: 672-678.
    (PubMed)     (Journal)

  7. Rat Genome Sequencing Consortium (2004). Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature, 428: 493-521.
    (PubMed)     (Journal)

  8. Milosavljevic A, Csuros M, Weinstock G, Gibbs RA (2003). Shotgun sequencing, clone pooling, and comparative stategies for mapping and sequencing. TARGETS, 2(6): 245-252.
    (Journal)

  9. Csuros M, Milosavljevic A (2002). Pooled genomic indexing (PGI): mathematical analysis and experiment design, in Algorithms in Bioinformatics, Second International Workshop, WABI 2002, Guigo R. and Gusfield D. (eds.). Springer Verlag: Heidelberg, Germany. p. 10-28.
    (PDF)     (PS)

  10. Paunesku T, Chang-Liu CM, Shearin-Jones P, Watson C, Milton J, Oryhon J, Salbego D, Milosavljevic A, Woloschak GE (2000). Identification of genes regulated by UV/salicylic acid. Int J Radiat Bio. 76: 189-198.
    (PubMed)

  11. Milosavljevic A (1999). Discovering Patterns in DNA Sequences by the Algorithmic Significance Method. In Pattern Discovery in Biomolecular Data: Tools, Techniques, and Applications, Wang J.T.L., Shapiro B.A. , Shasha D. (eds.). Oxford: Oxford University Press, p. 3-23.

  12. Milosavljevic A, Savkovic S, Crkvenjakov R, Salbego D, Serrato H, Kreuzer H, Gemmell A, Batus S, Grujic D, Carnahan S, Paunesku T, Tepavcevic J (1996). DNA sequence recognition by hybridization to short oligomers: experimental verification of the method on the E. coli genome. Genomics 37: 77-86.
    (PubMed)     (Journal)

  13. Milosavljevic A, Zeremski M, Strezoska Z, Grujic D, Dyanov H, Batus S, Salbego D, Paunesku T, Soares MB, Crkvenjakov R (1996). Discovering distinct genes represented in 29,570 clones from infant brain cDNA libraries by applying sequencing by hybridization methodology. Genome Res 8: 132-141.
    (PubMed)

  14. Milosavljevic A, Strezoska Z, Zeremski M, Grujic D, Paunesku T, Crkvenjakov R (1995). Clone clustering by hybridization. Genomics 27: 83-89.
    (PubMed)     (Journal)

  15. Milosavljevic A (1995). DNA sequence recognition by hybridization to short oligomers. J Comput Biol 2:355-370.
    (PubMed)


 

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